Challenges and limitations in the studies of glycoproteins: A computational chemist's perspective

Basit Öğe Kaydı
dc.authorid0000-0002-9421-8638
dc.authorid0000-0002-0772-9350
dc.contributor.authorBallı, Öykü İrem
dc.contributor.authorUversky, Vladimir N.
dc.contributor.authorDurdağı, Serdar
dc.contributor.authorWeber, Orkide Coşkuner
dc.date.accessioned2022-01-11T06:23:26Z
dc.date.available2022-01-11T06:23:26Z
dc.date.issued2021
dc.departmentTAÜ, Fen Fakültesi, Moleküler Biyoteknoloji Bölümüen_US
dc.description.abstractExperimenters face challenges and limitations while analyzing glycoproteins due to their high flexibility, stereochemistry, anisotropic effects, and hydration phenomena. Computational studies complement experiments and have been used in characterization of the structural properties of glycoproteins. However, recent investigations revealed that computational studies face significant challenges as well. Here, we introduce and discuss some of these challenges and weaknesses in the investigations of glycoproteins. We also present requirements of future developments in computational biochemistry and computational biology areas that could be necessary for providing more accurate structural property analyses of glycoproteins using computational tools. Further theoretical strategies that need to be and can be developed are discussed herein.
dc.identifier.citationBallı, Ö. İ., Uversky, V. N., Durdağı, S., & Coşkuner Weber, O. (2021). Challenges and limitations in the studies of glycoproteins: A computational chemist's perspective. Proteins: Structure, Function, and Bioinformatics.
dc.identifier.doi10.1002/prot.26242
dc.identifier.endpage339en_US
dc.identifier.issn0887-3585
dc.identifier.issn1097-0134
dc.identifier.issue2en_US
dc.identifier.scopus2-s2.0-85115923682
dc.identifier.scopusqualityQ1
dc.identifier.startpage322en_US
dc.identifier.urihttps://hdl.handle.net/20.500.12846/622
dc.identifier.volume90en_US
dc.identifier.wosWOS:000701553000001
dc.identifier.wosqualityQ2
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.institutionauthorBallı, Öykü İrem
dc.institutionauthorWeber, Orkide Coşkuner
dc.language.isoen
dc.publisherWILEY
dc.relation.ispartofProteins Structure, Function, and Bioinformatics
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı
dc.rightsinfo:eu-repo/semantics/closedAccess
dc.subjectClassical Molecular Simulationsen_US
dc.subjectExperimental Toolsen_US
dc.subjectGlycoproteinsen_US
dc.subjectMachine Learningen_US
dc.subjectQuantum Mechanicsen_US
dc.subjectMolecular Mechanicsen_US
dc.subjectKlassische Molekulare Simulationenen_US
dc.subjectExperimentelle Werkzeugeen_US
dc.subjectGlykoproteineen_US
dc.subjectMaschinelles Lernenen_US
dc.subjectQuantenmechaniken_US
dc.subjectMolekulare Mechaniken_US
dc.subjectKlasik Moleküler Simülasyonlaren_US
dc.subjectDeneysel Araçlaren_US
dc.subjectGlikoproteinleren_US
dc.subjectKuantum Mekaniğien_US
dc.subjectMoleküler Mekaniken_US
dc.titleChallenges and limitations in the studies of glycoproteins: A computational chemist's perspective
dc.typeArticle

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